- Ocean-shelf exchange, mixing processes
- Use of tracers and proxies to track water masses
- Ocean-atmosphere interaction, particularly wind-driven processes
- Model development and validation
- Synthesis of large datasets
- Application of novel sensors and techniques
- High latitude oceanography
- Data visualisation
- 2012 – 2016 Ph.D. Marine Science. University of Aberdeen / Scottish Association for Marine Science (SAMS), Oban, UK.
- 2009 M.Sc. Oceanography. University of Southampton / National Oceanography Centre (NOC), Southampton, UK.
- 2004 B.Sc. (Hons) Mechanical Design & Manufacture. University of Plymouth, Plymouth, UK.
PDRA Physical Oceanographer, SAMS, Oban, UK, January 2019 – present
Within OSNAP (Overturning in the Subpolar North Atlantic Program), I am investigating the location, scale and causes of deep overturning in the northeast Atlantic.
Translational Ocean Data Analyst, SAMS, Oban, UK, May 2016 – January 2019
In this role, my research focussed on the role of slope current instability in mediating exchange between the abyssal ocean and shallow seas. In this role, I also contributed to:
- Oceanids C2 (command and control): Development of a unified and consistent infrastructure for the control of multiple autonomous underwater vehicles. I worked on the ocean data synthesis and autonomous piloting work packages.
- MASSMO (Marine Autonomous Systems in Support of Marine Observations): Pioneering multi-partner series of trials and demonstrator missions that aim to explore and expand the use of innovative marine robots. I contributed near real-time data products using glider data, glider-historical data syntheses, 3D data visualisation for mission planning.
- SOLSTICE (Sustainable Oceans, Livelihoods and food Security Through Increased Capacity in Ecosystem research): 3D data visualisation and model data analysis in Pemba Channel region, Tanzania.
- ODaT (Ocean Data Tool): Development of an online GIS data tool which translates the output of NERC oceanographic programmes into products which can be used by the wider marine community. Work with Marine Scotland, Navy (DSTL) and BP to improve the scientific contribution to environmental monitoring. Resulted in a significant contribution to: Hughes, S.L., Hindson, J., Berx, B., Gallego, A. and Turrell, W.R. (2018) Scottish Ocean Climate Status Report 2016. Scottish Marine and Freshwater Science Vol 9 No 4, 167pp. DOI: 10.7489/12086-1
Graduate Research Assistant, SAMS, Oban, UK, 2012 – 2016
Thesis title: Shelf edge exchange and the influence on coastal oceanography. Supervisors: Dr. Finlo Cottier, Prof. Mark Inall.
- Investigated the impacts of shelf edge exchange processes on coastal waters, using a combination of historical data and contemporary observations.
- Collaborated with members of the FASTNEt (Fluxes Across Sloping Topography of the North East Atlantic) consortium to provide a historical basis to observations and model studies during the 4-year project.
- Combined historical observations to construct a high quality multi-decadal time series of salinity between the Scottish coastline and the continental shelf edge.
- Demonstrated a causal link between wind forcing and the advection of oceanic waters towards the Scottish coastline using a statistical model of the European Shelf.
Graduate Student, University of Southampton / NOC, Southampton, UK, 2008 – 2009.
Thesis title: On the formation and variability of Antarctic Bottom Water. Supervisors: Dr. Loic Jullion, Prof. Alberto Naveira Garabato.
- Investigated a potential link between wind forcing over the Weddell Sea and export of Antarctic Bottom Water into the Southern Ocean. Resulted in a publication (Jullion et al., 2010).
2009-2012: Marine Data Scientist, British Oceanographic Data Centre (BODC), Liverpool, UK.
- Responsible for the real-time data systems for the UK Argo profiling float project.
- Ensured delivery of Argo data to Global Data Assembly Centres and the Met Office.
- Screened floats for engineering and oceanographic anomalies prior to distribution.
- Developed software in Matlab and SQL to update the UK Argo data system.
- Represented BODC and the Partnership for Observation of the Global Oceans (POGO) at international conferences.
- Maintained the Southern Ocean Argo Regional Centre.
2007-2008: Design Engineer, Finetubes, Plymouth, UK.
- Design and development of in-house machinery and test equipment, supplying the aerospace, nuclear and marine industries.
Fraser, N., Inall, M.E., Magaldi,M.G., Haine, T.W.N., Jones, S.C. (2018). Wintertime Fjord-Shelf Interaction and Ice Sheet Melting in Southeast Greenland. Journal of Geophysical Research – Oceans, doi:10.1029/2018JC014435
Porter, M., Dale, A., Jones, S.C., Siemering, B., Inall, M.E. (2018). Cross-slope flow in the Atlantic Inflow Current driven by the on shelf deflection of a slope current. Deep-Sea Research Part I, doi:10.1016/j.dsr.2018.09.002
Jones, S.C., Cottier, F., Inall, M., & Griffiths, C. (2018). Decadal variability on the Northwest European continental shelf. Progress in Oceanography, doi: 10.1016/j.pocean.2018.01.012
Jones, S.C. (2016). Shelf edge exchange and the influence on coastal oceanography (Doctoral dissertation, University of Aberdeen).
Painter, S.C., Hartman, S.E., Kivimäe, C., Salt, L., Clargo, N.M., Bozec, Y., Daniels, C.J., Jones, S.C., Hemsely, V.S., Munns, L., Allen, S. (2016). Carbon exchange on the Hebrides Shelf, west of Scotland. Geophysical Research Letters, doi:10.1002/2015JC011599
Jullion, L., Jones, S.C., Naveira Garabato, A.C., Meredith, M.P. (2010). Wind-controlled export of Antarctic Bottom Water out of the Weddell Sea. Geophysical Research Letters, 37, L09609, doi:10.1029/2010GL042822
Cunningham, S. A. et al. Pole-to-Pole In-Situ Observing Systems for Measuring Volume, Heat and Freshwater Fluxes of the Atlantic Meridional Overturning Circulation, Submitted to Reviews of Geophysics (special edition), May 2019.
Jones, S.C., Inall, M.E., Porter, M., Cottier, F. Storm-driven across-shelf oceanic flows into coastal waters. To be submitted to Deep-Sea Research Part I. Estimated submission date June 2019.
Huthnance, J.M., Guihou, K., Hopkins, J., Inall, M.E., Jones, S.C., Loveday, B., Miller, P., Porter, M., Simpson, J., Springys, C., Stashchuk, N., Vlasenko, V., Berx, B. Ocean shelf exchange: NW European shelf seas. To be submitted to Ocean Science. Estimated submission date June 2019.
Selected oral presentations
Fraser, N., Inall, M., Magaldi, M., Haine, T., Jones, S. C. (2018). Wintertime Fjord-Shelf Interaction in Southeast Greenland, EGU 2018, Vienna, Austria.
Jones, S. C., Cottier, F., Inall, M. (2016). Shelf edge exchange and its influence on coastal oceanography, Challenger Society AGM, Liverpool, UK.
Jones, S. C., Cottier, F., Inall, M. (2014). Charting the pathways and inter-annual variability of a shelf edge current, AGU Ocean Sciences 2014, Honolulu, Hawaii (USA).
Selected poster presentations
Jones, S. C., Inall, M., Toberman, M., Berx, B. (2018). From historical climatology to near-real time: mapping ocean physics using scattered observations and robotic gliders. Challenger Society AGM, Newcastle, UK. Link to poster
Berx, B., Inall, M., Jones, S. C., Hopkins, J., Huthnance, J. (2016). Exchange between the Slope Current and the West Shetland Shelf, AGU Ocean Sciences 2016, New Orleans, Louisiana, USA.
Huthnance, J.M., Guihou, K., Hopkins, J., Inall, M.E., Jones, S.C., Loveday, B., Miller, P., Porter, M., Simpson, J., Springys, C., Stashchuk, N., Vlasenko, V., Xu, W. (2016). Transport along and across the north-west European shelf edge, AGU Ocean Sciences 2016, New Orleans, Louisiana, USA. Link to poster
Jones, S.C., Cottier, F., Inall, M., Porter, M. (2014). The inter-annual behaviour of a coastal current, Challenger Society AGM, Plymouth, UK. Link to poster
Jullion, L., Jones, S.C., Naveira Garabato, A.C., Meredith, M.P. (2010). Inter-annual variability of Antarctic Bottom Water exported from the Weddell Sea, AGU Ocean Sciences, Portland, Oregon, USA. Link to poster
Macdonald, F., Weeks, R.J., Houpert, L., Howe, J A., Jones, S.C. (2016). The Scottish Marine Robotics Facility: use of unmanned vehicles for environmental measurement, monitoring and decision making. Invited paper, 10th IFAC Conference on Control Applications in Marine Systems (CAMS 2016), Trondheim, Norway.
- Programming languages: Matlab, R, Python, SQL, LaTeX.
- Data handling: Hydrobase oceanographic database in a linux environment. Acquisition and processing of large observational datasets, including ICES, WOD, BODC, Argo. Climate reanalysis data (ECMWF). ANDRO trajectory atlas. AVISO gridded and along-track altimetry. NetCDF read / write. GeoTIFF read/write.
- Data visualisation: Use of Paraview visualisation software to generate 3D animations of complex datasets. ARCHER supercomputing resource overall competition winner – October 2017. See samcjones.com/data-visualisation/ for more information.
- Numerical model output: Particle tracking in the FLAME 1/12° basin-scale model, Atlantic Margin Model (AMM7), FVCOM, ROMS.
- GIS (Geographic Information System): ArcGIS Pro, ArcMap.
- Statistical analysis: Advanced statistical modelling techniques using R; Generalised linear modelling, Generalised Additive Mixed Models and Functional Data Analysis.
- Oceanographic instruments: Sea-Bird CTD operation and data processing, RD Instruments ADCP and Vessel-Mounted ADCP operation and data processing, RD Instruments VMDas proprietary VM-ADCP software operation, deep ocean mooring design and deployment.
- Autonomous Underwater Vehicles: Seaglider pilot, deployment / recovery and data processing.
- Teaching assistant, H2 Advanced Mathematics and Programming
Teaching interests include Programming and data handling, physical oceanography, oceanographic instrumentation, robotics in oceanography, statistics for physical oceanography.
- DY017, RRS Discovery. October / November 2014, PI: Dr. Stuart Painter (NOC-S). Vessel-Mounted ADCP operator, Sea-Bird CTD processing.
- JC88, RRS James Cook. June / July 2013, Hebridean shelf-edge. PI: Prof. Mark Inall (SAMS). Vessel-Mounted ADCP operator.
- D376, RRS Discovery. June / July 2012, Celtic Sea. PI: Prof. Mark Inall (SAMS). Vessel-Mounted ADCP operator.
- RV Calanus. March 2013. Servicing the Tiree Passage Mooring.
- RV Calanus. August 2013. Replacing the Tiree Passage Mooring.
- Construction of ocean-fjord simulation tank for teaching and outreach, May 2016
- Seaglider model exhibit for the SAMS Ocean Explorer Centre, Oban, May 2013. Subsequent use in numerous conferences and events showcasing SAMS marine robotics capability, most recently Scottish Parliament October 2017.
PUBLIC ENGAGEMENT AND OUTREACH
- Organised marine robotics exhibition for open day at SAMS Ocean Explorer Centre, May 2017
- Science demonstrator at NERC 50th Anniversary event, RRS Discovery, London, October 2015
- Data visualisation for documentary on the JC-088 cruise
- Argyll and Bute Astronomical Club Science Festival, October 2013
- Deliverly of interactive physics demonstration to 57 high school students, August 2012
- SAMS open day science demonstrator, May 2012
WORKING GROUP AND ORGANISATION MEMBERSHIP
ICES WGOH (Working Group on Oceanic Hydrography) chair-invited member, January 2019 – present
SAGES 2016 – present
Challenger Society 2014 – present
IMarEST 2014 – present