RESEARCH INTERESTS

  • Ocean-shelf exchange, mixing processes
  • Use of tracers and proxies to track water masses
  • Ocean-atmosphere interaction, particularly wind-driven processes
  • Model development and validation
  • Synthesis of large datasets
  • Application of novel sensors and techniques
  • High latitude oceanography
  • Data visualisation

EDUCATION

  • 2012 – 2016    Ph.D. Marine Science. University of Aberdeen / Scottish Association for Marine Science (SAMS), Oban, UK.
  • 2009    M.Sc. Oceanography. University of Southampton / National Oceanography Centre (NOC), Southampton, UK.
  • 2004    B.Sc. (Hons) Mechanical Design & Manufacture.  University of Plymouth,  Plymouth, UK.

RESEARCH EXPERIENCE

Postdoctoral Research

Translational Ocean Data Analyst, SAMS, Oban, UK, May 2016 – present

A varied and evolving position. My current research focusses on the role of slope current instability in mediating exchange between the abyssal ocean and shallow seas. I am also investigating the behaviour of mesoscale currents in the vicinity of near-Rossby radius features such as high-latitude fjord entrances.
Also in this role, I contribute to:

  • Oceanids C2 (command and control): Development of a unified and consistent infrastructure for the control of multiple autonomous underwater vehicles. I work on the ocean data synthesis and autonomous piloting work packages.
  • MASSMO (Marine Autonomous Systems in Support of Marine Observations): Pioneering multi-partner series of trials and demonstrator missions that aim to explore and expand the use of innovative marine robots. I contribute near real-time data products using glider data, glider-historical data syntheses, 3D data visualisation for mission planning.
  • SOLSTICE (Sustainable Oceans, Livelihoods and food Security Through Increased Capacity in Ecosystem research): 3D data visualisation and model data analysis in Pemba Channel region, Tanzania.
  • ODaT (Ocean Data Tool): Development of an online GIS data tool which translates the output of NERC oceanographic programmes into products which can be used by the wider marine community. Work with Marine Scotland, Navy (DSTL) and BP to improve the scientific contribution to environmental monitoring.

Doctoral Research

Graduate Research Assistant, SAMS, Oban, UK, 2012 – 2016

Thesis title: Shelf edge exchange and the influence on coastal oceanography.  Supervisors: Dr. Finlo Cottier, Prof. Mark Inall.

  • Investigated the impacts of shelf edge exchange processes on coastal waters, using a combination of historical data and contemporary observations.
  • Collaborated with members of the FASTNEt (Fluxes Across Sloping Topography of the North East Atlantic) consortium to provide a historical basis to observations and model studies during the 4-year project.
  • Combined historical observations to construct a high quality multi-decadal time series of salinity between the Scottish coastline and the continental shelf edge.
  • Demonstrated a causal link between wind forcing and the advection of oceanic waters towards the Scottish coastline using a statistical model of the European Shelf.

Masters Research

Graduate Student, University of Southampton / NOC, Southampton, UK, 2008 – 2009.

Thesis title: On the formation and variability of Antarctic Bottom Water.  Supervisors: Dr. Loic Jullion, Prof. Alberto Naveira Garabato.

  • Investigated a potential link between wind forcing over the Weddell Sea and export of Antarctic Bottom Water into the Southern Ocean.  Resulted in a publication (Jullion et al., 2010).

PROFESSIONAL BACKGROUND

2009-2012:     Marine Data Scientist, British Oceanographic Data Centre (BODC), Liverpool, UK.

  • Responsible for the real-time data systems for the UK Argo profiling float project.
  • Ensured delivery of Argo data to Global Data Assembly Centres and the Met Office.
  • Screened floats for engineering and oceanographic anomalies prior to distribution.
  • Developed software in Matlab and SQL to update the UK Argo data system.
  • Represented BODC and the Partnership for Observation of the Global Oceans (POGO) at international conferences.
  • Maintained the Southern Ocean Argo Regional Centre.

2007-2008:       Design Engineer, Finetubes, Plymouth, UK.

  • Design and development of in-house machinery and test equipment, supplying the aerospace, nuclear and marine industries.

PUBLICATIONS

Refereed publications

Jones, S., Cottier, F., Inall, M., & Griffiths, C. (2018). Decadal variability on the Northwest European continental shelf. Progress in Oceanography, doi: 10.1016/j.pocean.2018.01.012

Painter, S.C., Hartman, S.E., Kivimäe, C., Salt, L., Clargo, N.M., Bozec, Y., Daniels, C.J., Jones, S.C., Hemsely, V.S., Munns, L., Allen, S. (2016).  Carbon exchange on the Hebrides Shelf, west of Scotland. Geophysical Research Letters, doi:10.1002/2015JC011599

Jullion, L., Jones, S.C., Naveira Garabato, A.C., Meredith, M.P. (2010). Wind-controlled export of Antarctic Bottom Water out of the Weddell Sea. Geophysical Research Letters, 37, L09609, doi:10.1029/2010GL042822

Submitted

Porter, M., Dale, A., Jones, S.C., Siemering, B., Inall, M.E. Cross-slope flow driven by the on shelf deflection of a slope current: a supply of nutrients and heat to the European Shelf. Submitted to Deep-Sea Research Part I, May 2018.

In preparation

Huthnance, J.M., Guihou, K., Hopkins, J., Inall, M.E., Jones, S.C.,  Loveday, B., Miller, P., Porter, M.,  Simpson, J., Springys, C., Stashchuk, N., Vlasenko, V., Berx, B. Ocean shelf exchange: NW European shelf seas. To be submitted to Ocean Science.  Estimated submission date August 2018.

Fraser, N., Inall, M.E., Jones, S.C.  Wintertime fjord-shelf interaction in Southeast Greenland 1: idealised model experiments.  Estimated submission date June 2018.

COMMUNICATIONS

Selected oral presentations

Fraser, N., Inall, M., Magaldi, M., Haine, T., Jones, S. C. (2018).  Wintertime Fjord-Shelf Interaction in Southeast Greenland, EGU 2018, Vienna, Austria.

Jones, S. C., Cottier, F., Inall, M. (2016). Shelf edge exchange and its influence on coastal oceanography, Challenger Society AGM, Liverpool.

Jones, S. C., Cottier, F., Inall, M. (2014). Charting the pathways and inter-annual variability of a shelf edge current, AGU Ocean Sciences 2014, Honolulu, Hawaii (USA).

Selected poster presentations

Berx, B., Inall, M., Jones, S. C., Hopkins, J., Huthnance, J. (2016). Exchange between the Slope Current and the West Shetland Shelf, AGU Ocean Sciences 2016, New Orleans, Louisiana (USA).

Huthnance, J.M., Guihou, K., Hopkins, J., Inall, M.E., Jones, S.C.,  Loveday, B., Miller, P., Porter, M.,  Simpson, J., Springys, C., Stashchuk, N., Vlasenko, V., Xu, W. (2016). Transport along and across the north-west European shelf edge, AGU Ocean Sciences 2016, New Orleans, Louisiana (USA). Link to poster

Jones, S.C., Cottier, F., Inall, M., Porter, M. (2014). The inter-annual behaviour of a coastal current, Challenger Society AGM, Plymouth. Link to poster

Jullion, L., Jones, S.C., Naveira Garabato, A.C., Meredith, M.P. (2010). Inter-annual variability of Antarctic Bottom Water exported from the Weddell Sea, AGU Ocean Sciences, Portland, Oregon (USA). Link to poster

Conference papers

Macdonald, F., Weeks, R.J., Houpert, L., Howe, J A., Jones, S.C. (2016). The Scottish Marine Robotics Facility: use of unmanned vehicles for environmental measurement, monitoring and decision making. Invited paper, 10th IFAC Conference on Control Applications in Marine Systems, (CAMS 2016), Trondheim, Norway.

TECHNICAL SKILLS

  • Programming languages: Matlab, R, Python, SQL, LaTeX.
  • Data handling: Hydrobase oceanographic database in a linux environment. Acquisition and processing of large observational datasets, including ICES, WOD, BODC, Argo. Climate reanalysis data (ECMWF).  ANDRO trajectory atlas.  AVISO gridded and along-track altimetry.  NetCDF read / write.  GeoTIFF read/write.
  • Data visualisation: Use of Paraview visualisation software to generate 3D animations of complex datasets.  ARCHER supercomputing resource overall competition winner – October 2017.  See samcjones.com/data-visualisation/ for more information.
  • Numerical model output: Particle tracking in the FLAME 1/12° basin-scale model, Atlantic Margin Model (AMM7), FVCOM, ROMS.
  • GIS (Geographic Information System): ArcGIS Pro, ArcMap.
  • Statistical analysis: Advanced statistical modelling techniques using R; Generalised linear modelling, Generalised Additive Mixed Models and Functional Data Analysis.
  • Oceanographic instruments: Sea-Bird CTD operation and data processing, RD Instruments ADCP and Vessel-Mounted ADCP operation and data processing, RD Instruments VMDas proprietary VM-ADCP software operation, deep ocean mooring design and deployment.
  • Autonomous Underwater Vehicles: Seaglider pilot, deployment / recovery and data processing.

TEACHING

  • Teaching assistant, H2 Advanced Mathematics and Programming

Teaching interests include Programming and data handling, physical oceanography, oceanographic instrumentation, robotics in oceanography, statistics for physical oceanography.

SEAGOING EXPERIENCE

  • DY017, RRS Discovery.  October / November 2014, PI: Dr. Stuart Painter (NOC-S). Vessel-Mounted ADCP operator, Sea-Bird CTD processing.
  • JC88, RRS James Cook.   June / July 2013, Hebridean shelf-edge. PI: Prof. Mark Inall (SAMS).  Vessel-Mounted ADCP operator.
  • D376, RRS Discovery.  June / July 2012, Celtic Sea.  PI: Prof. Mark Inall (SAMS).  Vessel-Mounted ADCP operator.
  • RV Calanus. March 2013. Servicing the Tiree Passage Mooring.
  • RV Calanus. August 2013. Replacing the Tiree Passage Mooring.

UNIVERSITY SERVICE

  • Construction of ocean-fjord simulation tank for teaching and outreach, May 2016
  • Seaglider model exhibit for the SAMS Ocean Explorer Centre, Oban, May 2013. Subsequent use in numerous conferences and events showcasing SAMS marine robotics capability, most recently Scottish Parliament October 2017.

PUBLIC ENGAGEMENT AND OUTREACH

  • Organised marine robotics exhibition for open day at SAMS Ocean Explorer Centre, May 2017
  • Science demonstrator at NERC 50th Anniversary event, RRS Discovery, London, October 2015
  • Data visualisation for documentary on the JC-088 cruise
  • Argyll and Bute Astronomical Club Science Festival, October 2013
  • Deliverly of interactive physics demonstration to 57 high school students, August 2012
  • SAMS open day science demonstrator, May 2012

ORGANISATION MEMBERSHIP

SAGES                                  2016 – present

Challenger Society           2014 – present

IMarEST                              2014 – present

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